Comments on: Linux (and OSX) commands for working with FASTA files http://chrisduran.eu/bioinformatics/linux-and-osx-commands-for-working-with-fasta-files/ on surfing, positive cognition, IT and life... Fri, 09 Jul 2010 19:02:06 +0000 http://wordpress.org/?v=2.9.2 hourly 1 By: tux25 http://chrisduran.eu/bioinformatics/linux-and-osx-commands-for-working-with-fasta-files/comment-page-1/#comment-324 tux25 Tue, 13 Apr 2010 22:59:58 +0000 http://chrisduran.eu/?p=357#comment-324 Great, but I am looking for a line command or script (bash, perl) for cut a sequence in the fasta sequence file (for example amino acids between 52 and 987). Someone could help me ? Great, but I am looking for a line command or script (bash, perl) for cut a sequence in the fasta sequence file (for example amino acids between 52 and 987).

Someone could help me ?

]]> By: SiewFen http://chrisduran.eu/bioinformatics/linux-and-osx-commands-for-working-with-fasta-files/comment-page-1/#comment-322 SiewFen Thu, 11 Mar 2010 04:00:07 +0000 http://chrisduran.eu/?p=357#comment-322 hi i am looking about grep sequences from multifasta format and i saw ur page, just would like to ask if i would like to grep a sequence from a multifasta format. what should i do? eg; file1 001 003 file2 >001 fdjsklfslkfjd >002 afdsskljfskl >003 dfshafhsjk thanks hi
i am looking about grep sequences from multifasta format and i saw ur page,
just would like to ask if i would like to grep a sequence from a multifasta format. what should i do?

eg;

file1
001
003

file2
>001
fdjsklfslkfjd
>002
afdsskljfskl
>003
dfshafhsjk

thanks

]]> By: Chris http://chrisduran.eu/bioinformatics/linux-and-osx-commands-for-working-with-fasta-files/comment-page-1/#comment-321 Chris Thu, 25 Feb 2010 05:32:24 +0000 http://chrisduran.eu/?p=357#comment-321 Hi Lex, glad the post was useful, I appreciate the comment. What sort of bioinformatics work are you getting into? At any rate, enjoy the world of Bioinformatics! :) Hi Lex, glad the post was useful, I appreciate the comment. What sort of bioinformatics work are you getting into? At any rate, enjoy the world of Bioinformatics! :)

]]> By: Lex http://chrisduran.eu/bioinformatics/linux-and-osx-commands-for-working-with-fasta-files/comment-page-1/#comment-320 Lex Tue, 23 Feb 2010 19:53:05 +0000 http://chrisduran.eu/?p=357#comment-320 Hey Chris! I'm just getting started with Bioinformatics. That was very helpful! Thanks! Hey Chris! I’m just getting started with Bioinformatics. That was very helpful! Thanks!

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